Hello,
I just installed CADET-Python onto my Windows computer following the instructions provided on GitHub. I also installed the Cadet-Tutorials and have been working through these to familiarize myself with the software. After adjusting my utils file, I was able to complete lessons 1,2,3,4,5, and 7. However, I have been running into a consistent issue executing the solution scripts for Lesson 8: Introduction to CADET-Match.
When I run the following section of code in any of the example solutions:
the program executes briefly and then shuts down, providing me with the following output copied below. Could someone please help me interpret the error and so I can address this issue? Thank you in advance – Dwyer Stuart
2021-06-04 09:13:13,802 match.py print_version 113 CADETMatch starting up version: 0.6.23
2021-06-04 09:13:13,864 match.py print_version 138 joblib version: 1.0.1 tested with 0.15.1
2021-06-04 09:13:13,871 match.py print_version 138 addict version: 2.4.0 tested with 2.2.1
2021-06-04 09:13:13,871 match.py print_version 138 corner version: 0.0.0 tested with 2.0.1
2021-06-04 09:13:13,871 match.py print_version 138 emcee version: 0.0.0 tested with 3.0.2
2021-06-04 09:13:13,871 match.py print_version 138 SALib version: 1.3.11 tested with 0.0+nnone
2021-06-04 09:13:13,887 match.py print_version 138 deap version: 1.3.1 tested with 1.3.1
2021-06-04 09:13:13,887 match.py print_version 138 psutil version: 5.8.0 tested with 5.7.0
2021-06-04 09:13:13,887 match.py print_version 138 numpy version: 1.20.1 tested with 1.18.5
2021-06-04 09:13:13,887 match.py print_version 138 openpyxl version: 3.0.7 tested with 3.0.3
2021-06-04 09:13:13,902 match.py print_version 138 scipy version: 1.6.2 tested with 1.5.0
2021-06-04 09:13:13,902 match.py print_version 138 matplotlib version: 3.3.4 tested with 3.2.1
2021-06-04 09:13:13,902 match.py print_version 138 pandas version: 1.2.4 tested with 1.0.5
2021-06-04 09:13:13,902 match.py print_version 138 h5py version: 2.10.0 tested with 2.10.0
2021-06-04 09:13:13,918 match.py print_version 138 cadet version: 0.6 tested with 0.6
2021-06-04 09:13:13,918 match.py print_version 138 seaborn version: 0.11.1 tested with 0.10.1
2021-06-04 09:13:13,918 match.py print_version 138 scikit-learn version: 0.24.1 tested with 0.23.1
2021-06-04 09:13:13,918 match.py print_version 138 jstyleson version: 0.0.2 tested with 0.0.2
2021-06-04 09:13:14,734 util.py setupSimulation 1184 dextran_reference.h5 abstol=1e-06 reltol=1e-06
2021-06-04 09:13:15,273 match.py setupTemplates 253 simulation took 0.5370228290557861
2021-06-04 09:13:16,069 match.py setupTemplates 289 simulation final took 0.726675271987915
2021-06-04 09:13:16,799 gradFD.py create_template 38 grad simulation took 0.5977249145507812
2021-06-04 09:13:16,799 gradFD.py create_template 40 grad C:/Users/thomas.stuart/cadet1/CADET-Tutorial-master/08_CADET-Match_Introduction/results/misc/template_dextran_grad.h5 abstol=1e-06 reltol=1e-06
2021-06-04 09:13:18,996 loggerwriter.py write 10 Traceback (most recent call last):
2021-06-04 09:13:18,996 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\CADETMatch\match.py", line 322, in <module>
2021-06-04 09:13:18,996 loggerwriter.py write 10
2021-06-04 09:13:18,996 loggerwriter.py write 10 main(map_function=map_function)
2021-06-04 09:13:18,996 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\CADETMatch\match.py", line 33, in main
2021-06-04 09:13:18,996 loggerwriter.py write 10
2021-06-04 09:13:18,996 loggerwriter.py write 10 hof = evo.run(cache)
2021-06-04 09:13:18,996 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\CADETMatch\evo.py", line 123, in run
2021-06-04 09:13:18,996 loggerwriter.py write 10
2021-06-04 09:13:18,996 loggerwriter.py write 10 return cache.search[searchMethod].run(cache, tools, creator)
2021-06-04 09:13:19,012 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\CADETMatch\search\nsga3.py", line 36, in run
2021-06-04 09:13:19,012 loggerwriter.py write 10
2021-06-04 09:13:19,012 loggerwriter.py write 10 return checkpoint_algorithms.eaMuPlusLambda(
2021-06-04 09:13:19,012 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\CADETMatch\checkpoint_algorithms.py", line 89, in eaMuPlusLambda
2021-06-04 09:13:19,012 loggerwriter.py write 10
2021-06-04 09:13:19,012 loggerwriter.py write 10 stalled, stallWarn, progressWarn = util.eval_population(
2021-06-04 09:13:19,012 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\CADETMatch\util.py", line 944, in eval_population
2021-06-04 09:13:19,012 loggerwriter.py write 10
2021-06-04 09:13:19,012 loggerwriter.py write 10 return eval_population_base(
2021-06-04 09:13:19,012 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\CADETMatch\util.py", line 960, in eval_population_base
2021-06-04 09:13:19,012 loggerwriter.py write 10
2021-06-04 09:13:19,012 loggerwriter.py write 10 return process_population(
2021-06-04 09:13:19,012 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\CADETMatch\util.py", line 896, in process_population
2021-06-04 09:13:19,012 loggerwriter.py write 10
2021-06-04 09:13:19,012 loggerwriter.py write 10 processResultsMeta(save_name_base, ind, cache, results)
2021-06-04 09:13:19,012 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\CADETMatch\util.py", line 1001, in processResultsMeta
2021-06-04 09:13:19,027 loggerwriter.py write 10
2021-06-04 09:13:19,027 loggerwriter.py write 10 saveExperiments(save_name_base, cache.settings, cache.target, results, cache.settings["resultsDirMeta"], "%s_%s_meta.h5")
2021-06-04 09:13:19,027 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\CADETMatch\util.py", line 165, in saveExperiments
2021-06-04 09:13:19,027 loggerwriter.py write 10
2021-06-04 09:13:19,027 loggerwriter.py write 10 simulation.root.score[header] = score
2021-06-04 09:13:19,027 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\addict\addict.py", line 67, in __getattr__
2021-06-04 09:13:19,027 loggerwriter.py write 10
2021-06-04 09:13:19,027 loggerwriter.py write 10 return self.__getitem__(item)
2021-06-04 09:13:19,027 loggerwriter.py write 10 File "C:\Users\thomas.stuart\Anaconda3\lib\site-packages\addict\addict.py", line 70, in __missing__
2021-06-04 09:13:19,027 loggerwriter.py write 10
2021-06-04 09:13:19,027 loggerwriter.py write 10 if object.__getattribute__(self, '__frozen'):
2021-06-04 09:13:19,027 loggerwriter.py write 10 AttributeError
2021-06-04 09:13:19,027 loggerwriter.py write 10 :
2021-06-04 09:13:19,027 loggerwriter.py write 10 'Dict' object has no attribute '__frozen'
2021-06-04 09:13:19,027 util.py info 54 process shutting down