Here a short overview about today’s implementation call.
The general plan is to use the 2D-GRM as a template and strip is of all unnecessary functionality before adding the relevant fluxes.
Remark: next to actually implementing the fluxes in the residual, we also need to modify the sparsity pattern:
Because it turned out that it was not so trivial to remove particles from the 2D-GRM, as it would require modifying indices, memory allocation, etc, we decided for now to just leave it as is. Instead, we will recommend (or force) setting the film diffusion to zero and disabling all binding models / particle types. This way, we can leave all the internal structure in place and only need to focus on adding the fluxes.
- Publication: http://dx.doi.org/10.1016/j.jtbi.2013.09.023
- PR: Include compartment model for Tractor by schmoelder · Pull Request #95 · modsim/CADET
- Files: https://fz-juelich.sciebo.de/apps/files/?dir=/ModSim-Projektbox/Projects&fileid=979725932
- 2D-GRM Config Gist for CADET-Python: GRM2D · GitHub
@h.lanzrath : can you please also add the slides of your presentation to the project box? Let me know if you need access.
I suggest, we leave this forum discussion for more general topics and conceptual questions, as well as the notes of the calls. Implementation details should be discussed on Github.